| 2019 | Thirteen Doorways, Wolves Behind Them All | National Book Awards source ↗ (opens in a new tab) | Finalist · Young People's Literature | |
| 2019 | Thirteen Doorways, Wolves Behind Them All | Chicago Public Library Best of the Best source ↗ (opens in a new tab) | Selection · Best Teen Fiction | |
| 2019 | Thirteen Doorways, Wolves Behind Them All | NPR Books We Love source ↗ (opens in a new tab) | Selection · Books We Love | |
| 2019 | Thirteen Doorways, Wolves behind Them All | Booklist Editors' Choice source ↗ (opens in a new tab) | Selection · Books for Youth: Fiction, Older Readers | |
| 2019 | Thirteen Doorways, Wolves Behind Them All | School Library Journal Best Books of the Year source ↗ (opens in a new tab) | Selection · Young Adult | |
| 2019 | Thirteen Doorways, Wolves Behind Them All | BookPage Best Books of the Year source ↗ (opens in a new tab) | Selection · Young Adult | |
| 2017 | The Shadow Cipher | New York Public Library Best Books source ↗ (opens in a new tab) | Selection · Best Books for Kids | |
| 2017 | The Shadow Cipher | Chicago Public Library Best of the Best source ↗ (opens in a new tab) | Selection · Best Fiction for Older Readers | |
| 2017 | The Shadow Cipher | Kirkus Best Books of the Year source ↗ (opens in a new tab) | Selection · Middle Grade | |
| 2016 | Bone Gap | Michael L. Printz Award source ↗ (opens in a new tab) | Winner · Young Adult Literature | |
| 2016 | Bone Gap | Nebula Award (Novel, Novella and Andre Norton) source ↗ (opens in a new tab) | Nominee · Andre Norton | |
| 2015 | Bone Gap | National Book Awards source ↗ (opens in a new tab) | Finalist · Young People's Literature | |
| 2015 | Bone Gap | New York Public Library Best Books source ↗ (opens in a new tab) | Selection · Best Books for Teens | |
| 2015 | Bone Gap | Chicago Public Library Best of the Best source ↗ (opens in a new tab) | Selection · Best Teen Fiction | |
| 2015 | Bone Gap | Booklist Editors' Choice source ↗ (opens in a new tab) | Selection · Books for Youth: Fiction, Older Readers | |
| 2015 | Bone Gap | BookPage Best Books of the Year source ↗ (opens in a new tab) | Selection · Young Adult | |
| 2015 | Bone Gap | Publishers Weekly Best Books source ↗ (opens in a new tab) | Selection · Young Adult | |
| 2015 | Bone Gap | School Library Journal Best Books of the Year source ↗ (opens in a new tab) | Selection · Young Adult | |
| 2009 | Bad Apple | Chicago Public Library Best of the Best source ↗ (opens in a new tab) | Selection · Best Teen Fiction | |